Stanford hiv genotype database

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August undefined, 2024

WebbA curated database containing nearly all published HIV RT and protease sequences: a resource designed for researchers studying evolutionary and drug-related variation in the …

Differences in resistance mutations among HIV‐1 non‐subtype B ...

Webb1 feb. 2004 · The Stanford HIVdb program (HIVdb) scans a sequence for known resistance mutations and calculates a final score for each drug based on the sum of the corresponding penalties retrieved from a reference table in which the resistance mutations have definite values for the different drugs. WebbThe publicly available Stanford University HIV Drug Resistance Database [Liu and Shafer, 2006] (Stanford HIVdb) predicts genotypic drug resistance based on a pre-determined rules based... child labor laws in spanish

HIValg Program: Sequence Analysis - HIV Drug Resistance

Webb20 mars 2009 · Genotypic estimation of resistance is performed using the Stanford SIERRA web service. 3 DISCUSSION. The CPR tool aims to promote consistency between epidemiological studies by providing investigators worldwide with ready access to a simple, standard protocol for genotypic estimation of transmitted HIVDR. Webb7 juni 2016 · Our objective was to describe viral suppression and antiretroviral (ARV) resistance mutations in an ongoing cohort of perinatally-infected HIV+ (PHIV+) pregnant women. Descriptive analysis was performed using SPSS 18.0. From 2011 to 2014, we followed 22 PHIV+ pregnant women. Median age at prenatal entry was 19 years … Webb19 mars 2004 · The only additional sites are 10 and 71, both of which are considered accessory codons according to the Stanford drug resistance notes (Shafer, 2001). In this case, there are 89 patterns with at least five observations. A total of four terminal nodes result from recursively partitioning observations by using genotype group and individual … child labor laws international

Public availability of HIV-1 drug resistance sequence and …

Release Notes - HIV Drug Resistance Database - Stanford University

WebbThe Stanford University HIV Drug Resistance Database also provides helpful guidance for interpreting genotypic resistance test results. 1 Various additional tools also are … Webb1 juni 2006 · The Drug Resistance Summary section of the Stanford University HIV Drug Resistance Database contains diagrammatic summaries of HIV-1 drug-resistance mutations by drug class, summaries of the main mutations associated with each antiretroviral drug, and a complete list of the drug-specific comments and scores used … got watercolor paint on contact lensWebb1 dec. 2024 · It currently comprises: (1) ∼450 000 sequences (reverse transcriptase, protease or integrase) from ∼200 000 patients with treatment status, from all around the word; (2) ∼60 000 results of drug susceptibility assays from HIV-1 virus isolates; (3) clinical outcome data from 15 clinical trials; (4) many software programs and web services to … child labor laws in switzerland

"Webb26 dec. 2006 · We therefore interrogated the Stanford HIV Drug Resistance Database , where the updated results from this international collaboration maintain detailed RT mutation data for subtype G isolates. The output has detailed information on GenBank accession numbers and publication data, from which we deduced the country of sampling. " - Stanford hiv genotype database

Stanford hiv genotype database

HIVseq Program: Mutations Analysis - Stanford University

Webb18 maj 2024 · The Stanford HIV database maintains a prediction server for annotating HIV-1 sequences with known resistance mutations . ... The high-quality interactions from the Stanford HIV Genotype-Phenotype database were downloaded on 12/21/2024 and contained 1959 lines at the time of download. Webb8 apr. 2024 · Genetic variability and liability to develop drug-resistant mutations are the main characteristics of HIV-1, which can not only increase the risk of antiretroviral treatment (ART) failure, but also can lead to the spread of resistant strains. We aim to investigate the distribution of HIV-1 genotypes and prevalence of pretreatment drug …

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WebbA curated database containing nearly all published HIV RT and protease sequences: a resource designed for researchers studying evolutionary and drug-related variation in the … WebbBased on the PR/RT sequences, HIV-1 subtypes were classified as 95 (99%) HIV-1 subtype C (HIV-1C) while one sample as 02_AG. Integrase sequencing was successful for 89 sequences, and all the ...

WebbART-AiDE makes it possible to generate a permanent electronic and graphical record of a patient's antiretroviral treatment (ARV) history, plasma HIV-1 RNA levels, CD4 counts, and (when available) genotypic resistance data. Submitted data can be reviewed and the underlying XML file can be saved on the Graphical Summary page. Webb17 sep. 2024 · HIV drug resistance database. Stanford University. ... Paredes R, Tzou PL, van Zyl G, et al. Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation. PLoS One 2024; 12:e0181357. Wensing AM, Calvez V, Günthard HF, et al. 2024 Update of the Drug Resistance Mutations in HIV-1.

WebbThe program is linked to the Stanford HIV drug resistance database and can additionally perform viral genotyping and algorithmic estimation of resistance to specific antiretroviral drugs. AVAILABILITY: http://cpr.stanford.edu/cpr/index.html. Additional Information Webb10 okt. 2024 · HIV gene sequencing assays detect mutations that confer ARV drug resistance. Reverse transcriptase and protease gene mutations confer NRTI, NNRTI, and PI resistance. Integrase gene mutations confer integrase inhibitor (INSTI) resistance. gp41 (envelope) gene mutations confer fusion inhibitor (enfuvirtide) resistance.

Webb7 dec. 2024 · Clinical outcome data comprising genotype, treatments, plasma HIV-1 RNA levels and CD4 counts from 15 clinical trials and >1500 Treatment-Change Episodes … Genotype-Rx - HIV Drug Resistance Database - Stanford University Drug susceptibility results (fold-decreased susceptibility) of viruses containing one … Genotype-Clinical - HIV Drug Resistance Database - Stanford University HIVDB Program - HIV Drug Resistance Database - Stanford University The Stanford HIV Drug Resistance Database (HIVDB) ... from published … Support the School of Medicine, Stanford Healthcare, and Cancer Institute. Skip to … Single Genome Sequence Database - HIV Drug Resistance Database - Stanford … Transmitted Resistance Surveillance Map Published Virus Sequences From …

Webb12 okt. 2024 · hiv薬剤耐性検査は、抗hiv療法の選択および再選択の目的で行った場合に、3か月に1回を限度として6,000点を算定できる（2006年4月1日保険適用）。依頼は病院情報システムから行う。 (1) 依頼方法依頼画面は[6．感染]→[hiv確認検査]→[薬剤耐性検査] child labor laws in vietnamWebb30 sep. 2024 · RECall, MEGA X and the Stanford HIV database) ... Materials and methods: Results of HIV-1 genotypic drug resistance assay was evaluated by comparing an inhouse method to a commercial test. child labor laws in united statesWebb15 sep. 2006 · An HIV drug-resistance database is required to represent, store, and analyze the diverse forms of data underlying our knowledge of drug resistance and to make these data available to the broad community of researchers studying drug resistance in HIV and clinicians using HIV drug-resistance tests. Such genotype-treatment, genotype … got water bottlesWebbStanford HIV-1 drug resistance database (HIVdb version 8.9–1) was used to analyze the mutations and generate the final reports including drug resistance scores, with 0–9 for susceptible, 10–14 for potential low-level resistance, 15–29 for low-level resistance, 30–59 for intermediate resistance, and ≥ 60 for high-level resistance. got water in iphone charging portWebbA curated database containing nearly all published HIV RT and protease sequences: a resource designed for researchers studying evolutionary and drug-related variation in the … child labor laws louisianaWebbHIV-1 genotypic resistance testing during 2012–2024. In ... as per the Stanford HIV drug resistance database. The statistical analysis for CD4þ T cell and HIV-1 viral got water in charger port samsung galaxyWebb11 nov. 2024 · Filtered genotype-phenotype data on the Stanford HIV drug resistance database was retrieved for PIs (Das & Arnold, 2013). We have organized this dataset with respect to isolates and inhibitors, and 498 protease mutations have been observed. got water in my airpods